Deya arrived at 5 am on Friday aboard a KQ flight.
This is after his appeal over the extradition request was rejected by a UK court.
The preacher runs an evangelical church in Peckham, south-east London.
He has been on the list of most wanted persons for human trafficking since 2004.
In 2014, a London court acquitted Deya of separate charges of rape and sexual assault.
The Inner London Crown court entered a plea of not guilty against Deya.
He had been charged with four counts of rape, one of attempted rape, two of sexual assault and one of battery.
He denied all the charges.
His wife, Mary Deya was jailed in 2014 for stealing a baby at Kenyatta National Hospital in 2005.
She was sentenced to three years in prison by then a High court judge Msagha Mbogholi.
Magistrate Grace Nzioka had jailed Mary in 2011 for stealing a child and giving false information but she appealed the sentence.
-The Star|Star Reporter